Comparison of different approaches for automatic bark detection on log images

The sawmilling industry stores and measures logs with bark in order to maximize efficiency, quality conservation and preservation. However since billing is based on the diameter under bark, it is necessary to differentiate between bark areas and wood areas automatically or via manual assignment. This paper compares different methodologies to automatically differentiate between these areas based on colour images of the log surface of two species, spruce and pine. Additionally, the performance of the different methodologies is evaluated using the proportion of correctly detected bark areas, correctly detected wood areas and the total amount of detected bark and wood areas. In the end, an algorithm taking into account colour and texture information was found to perform well on both species. Based on a larger dataset, this methodology has the potential to detect the diameter under bark based on measurements of logs with bark.     

Esophagostomy Feeding Tube Use and Placement in Exotic Pets

Providing enteral nutrition to injured or ill exotic animal patients by means of assisted feedings minimizes catabolism and gastrointestinal morbidity associated with anorexia, while optimizing immune system and organ function, and providing nutritional precursors necessary for healing. When determining the nutritional needs of a debilitated animal, it is important to account for both metabolic rate and energy requirements. Providing enteral nutrition via a feeding tube utilizes the functional gastrointestinal tract in patients that cannot or will not eat. Additionally, administration of food through a feeding tube is significantly less stressful for patients than restraint and syringe feeding. Feeding tube placement should be considered in any animal where the stress associated with syringe feeding is likely to result in significant morbidity or when the need for an extended period of assisted feeding is required.     

Aeta Magbukún of Mariveles: Traditional Indigenous Forest Resource Use Practices and the Sustainable Economic Development Challenge in Remote Philippine Regions

The Aeta Magbukún of Mariveles are one of the least known and researched Indigenous peoples remaining on the fringe of the bay, and within the remaining forests in Bataan province on Luzon Island in the Philippines. This work describes the unique cultural systems and language of the Aeta Magbukún tribe in Biaan, Mariveles, and both the traditional forest resource use and the evolving new subsistence practices developed to adapt to the encroachment of non-Indigenous peoples onto ancestral lands. The Aeta's forest resource use practices are discussed from a sustainable Indigenous development context within unique socioeconomic, cultural, and environmental circumstances in Bataan.     

Optimal Management Practices for Nitrogen Application in Corn Cultivated During Summer and Fall in the Tropics

Optimal management practices for nitrogen (N) fertilization is well defined for corn (Zea mays) cultivated during summer (“summer” corn), but not for corn cultivated during the fall (“fall” corn) in the tropics. Two experiments were carried out to evaluate N rates (50, 100, 200, and 300 kg N ha^?1), N application timing (pre-planting – PP, V2–V3, and V5–V6) and N split application, once (at PP, V3, and V6), two (at V3+ V6) and three times (at PP+ V3+ V6) in corn cultivated during summer (2014/2015) and fall (2015/2016). Data on corn grain yield (CGY), weight of 1000-grains, leaf N content and values of soil-plant analyses development (SPAD) were collected and analyzed using univariate, multivariate (principal component analysis, PCA) and regression analysis. Results showed that corn growth was affected by N rates and splitting. Corn cultivated during summer presented higher CGY and weight-1000 g than corn cultivated during the fall. The highest yields were obtained with higher N rates on “summer” corn (125 kg N ha^?1) than “fall” corn (50 kg N ha^?1). Split N-application at vegetative growth stages, V3+ V6, or PP+ V2+ V6, provided higher yields for “summer” corn, while only PP application was a reliable period of N fertilization for “fall” corn. The finding is that corn cultivated during the fall presented a lower response to N and no obvious advantages to split N fertilization when compared to corn cultivated during summer. These optimal management practices for N fertilization in corn production in the tropics depend on soil water availability.     

Genetic analysis of resistance to spot blotch disease in wheat (Triticum aestivum L.) in Zambia

Understanding the genetics of resistance to spot blotch disease, caused by Bipolaris sorokiniana (Sacc.) Shoem, is important to design an appropriate breeding strategy to improve the trait. The objective of this study was to determine the gene action and mode of inheritance of resistance to spot blotch in wheat. Eight genotypes with varying resistance to the disease were crossed in a full diallel mating design. Parents and their progenies were evaluated for spot blotch resistance. Data were analyzed using Hayman’s diallel analysis. The results suggested the importance of additive gene effects in controlling the resistance to spot blotch in the materials under study. No epistasis, maternal, or reciprocal effects were detected. Resistance to spot blotch exhibited partial dominance. Therefore, exercising selection for resistance in the early segregating generation should be an effective approach because of the predominance of additive gene effects. The Wr/Vr graph showed that the parents 30SAWSN5 (P3) and Coucal (P4) possessed more dominant genes, which makes them particularly suitable for inclusion in breeding for resistance to spot blotch.     

Spatial variability of organic matter degradability in tidal Elbe sediments

Purpose

The microbial turnover of sediment organic matter (OM) in ports and waterways impacts water quality, sonic depth finding and presumably also rheological properties as well as greenhouse gas emissions, especially if organic carbon is released as methane. As a consequence, sediment management practices as a whole are affected. This study aimed to discern spatial OM degradability patterns in the Port of Hamburg and investigated correlations with standard analytical properties as a basis for future predictive modelling.

Materials and methods

Sediments in the Port of Hamburg were repeatedly sampled at nine locations along an east-west transect using a 1-m corer. In a stratified sampling approach, layers of suspended particulate matter (SPM), fluid mud (FM), pre-consolidated sediment (PS) and consolidated sediment (CS) were identified and individually analysed for long-term aerobic and anaerobic degradation of organic matter, DNA concentration, stable carbon isotope signature, density fractions and standard solids and pore water properties.

Results and discussion

The investigation area was characterised by a distinct gradient with a 10-fold higher OM degradability in upstream areas and lower degradability in downstream areas. Concomitantly, upstream locations showed higher DNA concentrations and more negative δ¹³C values. The share of bulk sediment in the heavy density fraction as well as the proportion and absolute amount of organic carbon were significantly larger at downstream locations. A depth and hence age-related gradient was found at individual locations, showing higher degradability of the upper, younger material, concomitant with higher DNA concentration, and lower OM turnover in the deeper, older and more consolidated material. Deeper layers were also characterised by higher concentrations of pore water ammonium, indicative of anaerobic nitrogen mineralisation.

Conclusions

Organic matter lability is inversely linked to its stabilisation in organo-mineral complexes. The observed degradability gradient is likely due to the different OM quality in relation to its origin. Downstream OM enters the system with the tidal flood current from the direction of the North Sea whereas upstream locations receive OM originating from the catchment, containing more autochthonous, plankton-derived and more easily degradable components. At individual sampling points, depth-related degradability gradients reflect an age gradient, with easily degradable material in top layers and increasing stabilisation of OM in organo-mineral compounds with depth.

     

Canine CD4+ T‐cell lymphoma identified by flow cytometry exhibits a consistent histomorphology and gene expression profile

T‐cell lymphomas (TCL) are a diverse group of neoplasms with variable diagnostic features, pathophysiologies, therapeutic responses and clinical outcomes. In dogs, TCL includes indolent and aggressive tumours such as T‐zone lymphoma (TZL) and peripheral T‐cell lymphoma (PTCL), respectively. Delineation of molecular subtypes and investigation into underlying pathophysiologies of aggressive TCLs remains inadequate. We investigate the correlations between flow cytometry and histopathology of 73 cases of nodal TCL. The majority of cases (82.2%) were characterized as CD4⁺ TCL by flow cytometry. Fewer cases were classified as CD8⁺ TCL (6.8%) or CD4^?CD8^? TCL (11.0%). All cases, regardless of immunophenotype, exhibited conserved histologic features consistent with the WHO classification of PTCL. Histologic subsets of PTCL corresponding to immunophenotypic features were not identified. Neoplastic cell size determined by flow cytometry correlated significantly with mitotic rate. RNA‐seq was performed on a subset of CD4⁺ PTCL cases (n = 6) and compared with sorted control CD4⁺ T‐cells. The gene expression pattern of CD4⁺ PTCL was similar between all cases regardless of breed. PTCL was enriched in pathways representing G‐coupled protein receptor signalling, extracellular matrix remodelling and vascular development, immune signalling and mitotic activity. Furthermore, global gene expression changes were consistent with downregulation of PTEN signalling and upregulation of the MTOR‐PI3K‐ATK axis. In this study, we evaluated the correlations between flow cytometry, histopathology and gene expression within a large cohort of nodal TCLs. We further demonstrate the ability of flow cytometry to identify a subtype of T‐cell lymphoma, CD4+ PTCL, with a uniform histomorphology and gene expression profile.     

Efficacy of amoxycillin and azithromycin for the empirical treatment of shelter cats with suspected bacterial upper respiratory infections

Thirty-one cats showing clinical signs of upper respiratory tract disease with a presumed bacterial component based on clinical signs were administered either amoxycillin or azithromycin to determine which drug protocol was optimal for empirical use. A clinical score was determined and nasal and pharyngeal swabs were collected for bacterial culture, virus isolation and polymerase chain reaction prior to the start of therapy. Cats failing to respond to the initial antibiotic were then administered the other drug. There were no differences in clinical scores between the two groups at the start of therapy. Eleven of 31 cats improved after administration of the first antibiotic, 16 cats were switched to the alternate antibiotic, and four cats were removed from the study for additional supportive treatments. Eight of 27 cats failed to respond to either antibiotic. The chi2 test for outcomes revealed no differences in response to therapy for either antimicrobial.